Count parent-offspring pairs in POP format

Parent-offspring pairs are counted between potential offspring cohort and potential parents grouped by age, year, and location of sampling.

Usage

as_pop(samples)

write_pop(x, path = "pop.txt")

read_pop(path)

Arguments

samples

A sample_family data.frame of tekka() result.

x

An outcome of as_pop()

path

A file name or connection to write to

Value

A data.frame of "pop" subclass with six columns:

• cohort: birth year of offspring

• capture_year: of parents

• capture_age: of parents

• location: where parents were sampled

• pops: the count of parent-offspring pairs observed within samples

• comps: the number of possible comparisons, including only pairs where one sample is younger than the other.

Details

as_pop() converts a sample_family data frame to POP format.

write_pop() writes a POP data.frame to a file.

See also

as_pop2() for the extended POP format.

find_kinship() to count kinship within samples.

Examples

set.seed(666)
result = tekka("-y25 -l2 --sa 2,2 --sj 2,2")
samples = result$sample_family[[1L]]
as_pop(samples)
#> # A tibble: 25 × 6
#>    cohort capture_year capture_age location  pops comps
#>     <int>        <int>       <int>    <int> <int> <int>
#>  1     24           24          10        1     1     4
#>  2     24           25           7        1     1     8
#>  3     25           25           7        1     2     8
#>  4     15           24          10        1     0     1
#>  5     18           24           9        1     0     2
#>  6     18           24          10        1     0     2
#>  7     20           24           9        1     0     3
#>  8     20           24          10        1     0     3
#>  9     20           25           7        1     0     6
#> 10     21           24           4        0     0     2
#> # ℹ 15 more rows