make_gene_genealogy() generates a random gene genealogy from a table.
Usage
make_gene_genealogy(samples)
gather_segments(samples)
count_uncoalesced(genealogy)
annotate_sampled(genealogy)
Arguments
- samples
A data.frame: sample_family or output from gather_segments().
- genealogy
An output from make_gene_genealogy().
Details
gather_segments() transforms an individual-based sample_family into
a segment-based table.
count_uncoalesced() counts uncoalesced roots of the samples.
annotate_sampled() adds "sampled" edge attribute: TRUE if sampled,
FALSE if upstream of samples, NA if unrelated.
