Parameters

Classes
struct	tumopp::EventRates
	Parameters for the probability distributions of waiting times. More...
struct	tumopp::CellParams
	Parameters for Cell class. More...

Functions
clipp::group	tumopp::simulation_options (nlohmann::json *vm)
	Parameters of Simulation class.
clipp::group	tumopp::cell_options (nlohmann::json *vm, EventRates *init_event_rates, CellParams *cell_params)
	Parameters of Cell class.

Detailed Description

Function Documentation

cell_options()

clipp::group tumopp::cell_options ( nlohmann::json * vm, EventRates * init_event_rates, CellParams * cell_params )

inline

Parameters of Cell class.

Command line option	Symbol	Variable
-b,--beta0	\(\beta_0\)	EventRates::birth_rate
-d,--delta0	\(\delta_0\)	EventRates::death_rate
-a,--alpha0	\(\alpha_0\)	EventRates::death_prob
-m,--rho0	\(\rho_0\)	EventRates::migra_rate
-k,--shape	\(k\)	CellParams::GAMMA_SHAPE
-p,--symmetric	\(p_s\)	CellParams::PROB_SYMMETRIC_DIVISION
-r,--prolif	\(\omega_{\max}\)	CellParams::MAX_PROLIFERATION_CAPACITY
--ub	\(\mu_\beta\)	CellParams::RATE_BIRTH
--ud	\(\mu_\delta\)	CellParams::RATE_DEATH
--um	\(\mu_\rho\)	CellParams::RATE_MIGRA
--mb	\(\bar s_\beta\)	CellParams::MEAN_BIRTH
--md	\(\bar s_\delta\)	CellParams::MEAN_DEATH
--mm	\(\bar s_\rho\)	CellParams::MEAN_MIGRA
--sb	\(\sigma_\beta\)	CellParams::SD_BIRTH
--sd	\(\sigma_\delta\)	CellParams::SD_DEATH
--sm	\(\sigma_\rho\)	CellParams::SD_MIGRA

simulation_options()

clipp::group tumopp::simulation_options ( nlohmann::json * vm )

inline

Parameters of Simulation class.

Command line option	Symbol	Variable
-D,--dimensions	-	-
-C,--coord	-	-
-L,--local	\(E_2\)	-
-P,--path	-	-
-O,--origin	\(N_0\)	-
-N,--max	\(N_\max\)	-
-T,--plateau	-	-
-U,--mutate	\(N_\mu\)	-
-o,--outdir	-	-
-I,--interval	-	-
-R,--record	-	-
--seed	-	-