Sprinkle mutations on genealogy
Usage
make_sample(graph, nsam = 0L, mu = NULL, segsites = NULL)
edge_lengths(graph, mu = 0, accel = 0)
Arguments
- graph
igraph
- nsam
number of cells to sample
- mu
mutation rate per cell division (ignored if segsites is given)
- segsites
number of segregating sites
- accel
assumption undocumented yet
Details
make_sample creates a genotype matrix from a given genealogy tree.
edge_lengths() calculates lengths of edges on a given genealogy tree.