Classes
struct	edal::IndividualParams
	Parameters for Individual class. More...

Functions
clipp::group	edal::general_options (nlohmann::json *vm)

clipp::group	edal::individual_options (nlohmann::json vm, IndividualParams p)
	Symbols for the program options can be different from those in equations. More...

Variables
double	edal::IndividualParams::BETA_PARAM = 3.0
	\( \alpha \) of Beta distribution in \( F(u,v) \)

size_t	edal::IndividualParams::CARRYING_CAPACITY = 1000u
	\( K_{\max} \) in \( K_e(I)\)

double	edal::IndividualParams::AVG_NUM_OFFSPINRGS = 4.0
	\( b \) in \( w(I) \)

double	edal::IndividualParams::HEIGHT_PREFERENCE = 2.0
	\( h_0 \) in \( \Xi(y_0,y_1 \mid u,v) \)

double	edal::IndividualParams::DIAMETER_PREFERENCE = 2.0
	\( h_1 \) in \( \Xi(y_0,y_1 \mid u,v) \)

double	edal::IndividualParams::TOEPAD_SELECTION = 2.0
	\( s_0 \) in \( W(x_0,x_1 \mid u,v) \)

double	edal::IndividualParams::LIMB_SELECTION = 2.0
	\( s_1\) in \( W(x_0,x_1 \mid u,v) \)

double	edal::IndividualParams::PREF_COMPETITION = 2.0
	\(c_y\) in \(C_y(I,J)\)

double	edal::IndividualParams::MORPH_COMPETITION = 2.0
	\(c_x\) in \(C_x(I,J)\)

double	edal::IndividualParams::MATING_SIGMA = 0.05
	\( \sigma_a \) in \( \psi(f,c \mid m) \)

double	edal::IndividualParams::MU_LOCUS = 1e-4
	Mutation rate per locus per generation. More...

unsigned long	edal::IndividualParams::MUTATION_MASK = 0
	Flag set to protect specific traits from mutations. More...

double	edal::IndividualParams::MIGRATION_RATE = 0.005
	Migration rate \(m\) (i.e., \(Nm\) makes the expected # of migrants)

static constexpr double	edal::IndividualParams::NORMAL_SIGMA = 0.3
	\( \sigma \) of Normal distribution in v2 \( F(u,v) \)

static constexpr double	edal::IndividualParams::C0 = 1.0
	\( c_0 \) of Normal distribution in v2 \( F(u,v) \)

static constexpr double	edal::IndividualParams::C1 = 0.5
	\( c_1 \) of Normal distribution in v2 \( F(u,v) \)

Detailed Description

1/////////2/////////3/////////4/////////5/////////6/////////7/////////

Function Documentation

◆ general_options()

clipp::group edal::general_options ( nlohmann::json * vm )

inline

Options description for general purpose Symbols for the program options can be different from those in equations

Returns: Program options description

Command line option	Symbol
`-k,--patch_size`	\(K_0\)
`--row,--col`	-
`-T,--time`	-
`-I,--interval`	-

◆ individual_options()

clipp::group edal::individual_options	(	nlohmann::json *	vm,
		IndividualParams *	p
	)

inline

Symbols for the program options can be different from those in equations.

Returns: Program options description

Command line option	Symbol	Variable
`-a,--beta_param`	\(\alpha\)	IndividualParams::BETA_PARAM
`-K,--carrying_capacity`	\(K_{\max}\)	IndividualParams::CARRYING_CAPACITY
`-b,--birth_rate`	\(b\)	IndividualParams::AVG_NUM_OFFSPINRGS
`-p,--height_pref`	\(h_0\)	IndividualParams::HEIGHT_PREFERENCE
`-P,--diameter_pref`	\(h_1\)	IndividualParams::DIAMETER_PREFERENCE
`-s,--toepad_select`	\(s_0\)	IndividualParams::TOEPAD_SELECTION
`-S,--limb_select`	\(s_1\)	IndividualParams::LIMB_SELECTION
`-c,--pref_compe`	\(c_y\)	IndividualParams::PREF_COMPETITION
`-C,--morph_compe`	\(c_x\)	IndividualParams::MORPH_COMPETITION
`-f,--mating_sigma`	\(\sigma_a\)	IndividualParams::MATING_SIGMA
`-u,--mu_locus`	-	IndividualParams::MU_LOCUS
`-U,--mutation_mask`	-	IndividualParams::MUTATION_MASK
`-m,--migration_rate`	\(m\)	IndividualParams::MIGRATION_RATE

Variable Documentation

◆ MU_LOCUS

double edal::IndividualParams::MU_LOCUS = 1e-4

Mutation rate per locus per generation.

Mutations occur at equal rates across all loci; the probabilities of forward and backward mutations are equal.

◆ MUTATION_MASK

unsigned long edal::IndividualParams::MUTATION_MASK = 0

Flag set to protect specific traits from mutations.

e.g., 10 ("00001010") blocks mutations on limb and diameter preference

Classes

Functions