tumopp: Tumor growth simulator in C++
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This is the complete list of members for tumopp::Tissue, including all inherited members.
benchmark_ | tumopp::Tissue | private |
cemetery_ | tumopp::Tissue | private |
coord_func_ | tumopp::Tissue | private |
drivers_ | tumopp::Tissue | private |
engine_ | tumopp::Tissue | private |
entomb(const std::shared_ptr< Cell > &) | tumopp::Tissue | private |
extant_cells_ | tumopp::Tissue | private |
grow(size_t max_size, double max_time=100.0, double snapshot_interval=0.0, size_t recording_early_growth=0u, size_t mutation_timing=0u) | tumopp::Tissue | |
id_tail_ | tumopp::Tissue | private |
init_coord(unsigned dimensions, const std::string &coordinate) | tumopp::Tissue | private |
init_insert_function(const std::string &local_density_effect, const std::string &displacement_path) | tumopp::Tissue | private |
insert | tumopp::Tissue | private |
insert_adjacent(const std::shared_ptr< Cell > &x) | tumopp::Tissue | private |
migrate(const std::shared_ptr< Cell > &) | tumopp::Tissue | private |
num_empty_neighbors(const coord_t &) const | tumopp::Tissue | private |
operator<<(std::ostream &ost, const Tissue &tissue) | tumopp::Tissue | friend |
plateau(double time) | tumopp::Tissue | |
positional_value(const coord_t &) const | tumopp::Tissue | inlineprivate |
push(std::shared_ptr< Cell > moving, const coord_t &direction) | tumopp::Tissue | private |
push_minimum_drag(std::shared_ptr< Cell > moving) | tumopp::Tissue | private |
queue_ | tumopp::Tissue | private |
queue_push(const std::shared_ptr< Cell > &, bool surrounded=false) | tumopp::Tissue | private |
recorded_ | tumopp::Tissue | mutableprivate |
roulette_direction(const coord_t ¤t) const | tumopp::Tissue | private |
size() const noexcept | tumopp::Tissue | inline |
snapshots_ | tumopp::Tissue | private |
snapshots_append() | tumopp::Tissue | private |
steps_to_empty(const coord_t ¤t, const coord_t &direction) const | tumopp::Tissue | private |
stroll(std::shared_ptr< Cell > moving, const coord_t &direction) | tumopp::Tissue | private |
swap_existing(std::shared_ptr< Cell > *x) | tumopp::Tissue | private |
time_ | tumopp::Tissue | private |
Tissue(size_t initial_size=1u, unsigned dimensions=3u, const std::string &coordinate="moore", const std::string &local_density_effect="const", const std::string &displacement_path="random", const EventRates &init_event_rates=EventRates{}, uint_fast32_t seed=std::random_device{}(), bool verbose=false, bool enable_benchmark=false) | tumopp::Tissue | |
to_nearest_empty(const coord_t ¤t) const | tumopp::Tissue | private |
treatment(double death_prob, size_t num_resistant_cells=3u) | tumopp::Tissue | |
verbose_ | tumopp::Tissue | private |
write_benchmark(std::ostream &) const | tumopp::Tissue | |
write_drivers(std::ostream &) const | tumopp::Tissue | |
write_history(std::ostream &) const | tumopp::Tissue | |
write_snapshots(std::ostream &) const | tumopp::Tissue | |
~Tissue() (defined in tumopp::Tissue) | tumopp::Tissue |