Evolutionary Diversification in Anolis Lizards

Simulation program is written in C++. The results are analyzed in R.

• Doxygen documentation
• Model description
• Project page on GitHub

Requirements

• Unix-like environment (macOS, Linux, etc.)
• C++14 compiler (clang++ >= Apple LLVM 8.1, g++ >= 5.3)
• CMake (>= 3.12.0)

The following libraries are optional or automatically installed:

• clippson
• cxxwtl
• sfmt-class
• zlib

Parameters and functions

• Biological parameters
• Habitat preference
• Natural selection
• Mating
• Life cycle

Results

• Possible Ke values with sojourn time normalization (anolis_v3)
• Simulation results with sojourn time normalization (anolis_v3)
• Possible Ke values with habitat preference normalization (anolis_v3a)
• Evolutionary branching on simple condition
• Evolutionary branching on simple condition (Gaussian form)
• Isolation by distance in one-dimensional stepping-stone
• Evolutionary branching on simple condition (non-random mating by Débarre 2012)
• Evolutionary branching on simple condition (non-random mating by TPG2013)
• Evolutionary branching on simple condition (non-random mating by TPH2011)
• Mutation-drift balance